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ARTICLE |
CORRESPONDENCE Ludvig A. Munthe: l.a.munthe{at}medisin.uio.no OR Bjarne Bogen: b.bogen{at}medisin.uio.no
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L.A. Munthe and B. Bogen contributed equally to this paper.
G.Y. Qiu's present address is Shanghai Shuguang Hospital, 200032 Shanghai, China.
B lymphocytes proliferate in response to extrinsic antigen and help from T cells, but enter a quiescent memory state once antigen is removed (1). However, if antigen is not removed, B cells could chronically proliferate, accumulating genetic changes in the process, and ultimately become malignantly transformed. Consistent with such an idea, B lymphoma development has been associated with chronic infections caused by EBV, hepatitis C, and Helicobacter pylori, autoimmune diseases like rheumatoid arthritis, Sjögren's syndrome, and systemic lupus erythematosus, and allotransplantation as well as graft versus host disease (for review see reference 2, 3). However, most B lymphomas arise in the absence of any known antigenic exposure. Thus, novel sources of antigen relevant to lymphomagenesis should be sought.
Further suggesting a role for chronic antigenic stimulation, human follicular (2, 4, 5) and diffuse large B cell lymphomas (2, 6) are often infiltrated with T cells. However, the specificities and function of these T cells are unknown. Thus, it is unclear whether the infiltrating T cells attack the lymphoma cells, are inert neutral bystanders, or actually support lymphoma growth through unknown mechanisms. We have investigated if T cells with a defined specificity toward a clonally restricted self-antigen, constitutively produced by B cells, could induce B lymphoma development.
B cells express a receptor for antigen (B cell receptor [BCR]) with variable regions generated by rearrangement of V(D)J gene segments and somatic hypermutation. These genetic mechanisms generate variable regions with unique antigenic determinants, called idiotopes, which mark each clone of B cells. Id is expressed on surface Ig of B cells and may be recognized by antibodies (7). In addition, it has been shown that both B lymphoma (8, 9) and B cells (10) partially degrade their endogenous BCR and display Id peptides on their MHC class II molecules to CD4+ T cells (reference 11; Fig. 1 A). Supporting evidence comes from the finding that Ig-derived peptides, including Id peptides, can be eluted from class II molecules of B lymphoma cells and EBV transformed B cells (1215).
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Based on the evidence presented here, it was suggested that infrequent B cells could directly interact with infrequent Id-specific T cells in a process called Id-driven TB collaboration (20). However, the rarity of matching B and T cells made it difficult to prove that such interactions actually occurred in vivo. This problem was circumvented by making paired Id+Ig L chain transgenic mice and Id-specific TCR-transgenic mice, which harbor high frequencies of Id+ B cells and Id-specific CD4+ T cells, respectively (21, 22). By transferring B and T cells between such paired strains of mice, it was demonstrated in two independent models by us (10, 23) and others (24) that cognate Id-driven TB collaboration occurred in vivo. Moreover, such Id-driven TB collaboration resulted in induction of autoantibodies (23, 24). In the course of these experiments, we incidentally observed that Id+
2315 L chain transgenic mice, which had repetitiously received Id-specific Th2 cells, developed frank lymphomas after a latency period of >5 mo. These results suggested that Id peptides could represent a source of diversified antigen for stimulation of Th2 cells, chronic cognate B cell help, and lymphomagenesis.
| RESULTS |
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2315 Ig L chain (21). The amino acids 91101 of this chain correspond to a CDR3 Id peptide that is exceedingly rare in normal mice caused by somatic mutations in positions 9496 (Tyr94Ser95Thr96
Phe94Arg95Asn96). The
2315 L chain is constitutively processed by the Id+ B cells, and the Id peptide is presented on MHC class II molecules (I-Ed) (810) to Id-specific CD4+ T cells from TCR transgenic mice (reference 22; Fig. 1 A).
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To remove any confounding effects of normal B cells, lymphomatous spleen cells were transferred into RAG2/ recipients that developed lymphomas within 68 wk. The lymphoma cells lacked the follicular B cell marker CD23, the germinal center marker BCL-6 (2), as well as the B1 cell marker CD5 (Fig. 3 A and Fig. S2, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1). They expressed surface markers suggestive of a relationship to the marginal zone lineage (CD23CD21/35Hi CD1dHiCD38HiCD9+IgMHi; Fig. 3, A and B; and Fig. S2). An equivalent phenotype was found in the lymphoma originator mice (Fig. S2 and not depicted).
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(CD123) and ß (CD131) chains of the IL-3 receptor (Fig. 3, E and F). To the best of our knowledge, expression of the IL-3 receptor has not been characterized in the marginal zone B cell compartment. We therefore investigated this issue and found that the IL-3 receptor was expressed on most marginal zone B cell precursors, but less on mature marginal zone B cells (Fig. S4, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1). In conclusion, the functional IL-3 responsiveness, the IL-3 receptor expression of lymphoma cells, and the phenotype described in the preceding section point to a relationship with marginal zone precursor B cells.
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2 Id+ L chain (Figs. 2 F and 3 G). In striking contrast, B cells of age -matched Id+ mice expressed mainly
, and little
2, caused by leakiness of allelic exclusion with age (reference 21; Fig. 3 G). The induction of high
2 Id+ L chain expression required Id specificity of Th2 cells because injection of Th2 cells with an irrelevant specificity (ovalbumin) failed to increase
2 expression (Fig. 3 H). These results indicate that injection of Id-specific Th2 cells selectively induced lymphoma cells with a high stimulatory capacity for the injected T cells. Conversely, because lymphoma cells displayed high levels of CD40 (Fig. 3 G), they should be especially receptive to help from activated T cells that are known to express CD40L (1).
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Consistent with the bidirectional stimulation observed in vitro, lymphoma tissue was infiltrated by Id-specific T cells that were activated (CD69+) and greatly increased in numbers compared with controls (Fig. 5, AC). Moreover, histological sections revealed that infiltrating Id-specific T cells were frequently in synapse with lymphoma cells, indicating ongoing collaboration in vivo (Fig. 2 G). Note that Id-specific T cells were only expanded in lymphoma-bearing mice, but not in Th2-injected Id+ littermates that did not develop lymphomas (Fig. 5, A and B). This finding demonstrated prolonged mutual expansion of paired B and T cells exclusively in the mice that had undergone lymphomagenesis.
Id+ lymphoma eventually expand autonomously, independent of T cells
It was of interest whether B lymphomas maintained a reliance on Id-specific T cells for their growth. To test this, lymphoma cells were transferred to recipient animals. After only two transfers, hardly any Id-specific CD4+ T cells were detectable in lymphomas of recipients, suggesting that Id+ lymphomas had become independent of T cells (Fig. 5 D). In fact, signs of T cell independency were sometimes found already in the original lymphoma mice because lymphoma tissue in kidneys were sometimes devoid of Id-specific T cells (Fig. S3).
Lymphoma development and reemergence of Id-specific T cells could be monitored in the blood during the latency period
We have previously described that Id-specific Th2 cells injected into Id+ mice trigger short-term B cell proliferation, germinal center formation, extra follicular B cell differentiation, and plasma cell differentiation (23). Here, we demonstrate that injected Th2 cells also activate marginal zone B precursors and marginal zone B cells (Fig. S5, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1). However, consistent with previous results (10, 23), Id-driven TB collaboration waned within 7 wk after last T cell transfer, at which time point mice had essentially normal B cell populations and very few Id-specific T cells (< 1%).
It was of interest to detect early signs of lymphoma development during the latency period. However, it is problematic to approach this issue because even if a killed mouse was found to have suspicious changes, we could not be certain if the very same mouse eventually would have developed clinical lymphoma. To circumvent this problem, we resorted to repeated staining of blood lymphocytes during the latency period. Six Id+ mice injected eight times with Id-specific Th2 cells were followed. Although increased numbers of Id+IgM+BrdU+CD69+ blasts were found in the blood within the first 35 d after the last T cell transfer, such supposedly polyclonally activated B cells had disappeared by day 50 (Fig. S6, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1, and not depicted). However, after another 50 d, two out of the three mice that several months later developed lymphomas had a striking increase in IdHiIgMHi CD69 large blasts (Fig. S6). The same two mice also had an increase in Id-specific CD4+ T cells. Thus, occurrence of lymphoma-like B cells and Id-specific T cells in blood correlated significantly (P < 0.001) and heralded later lymphoma development (Fig. S6).
Id+ lymphoma were biclonal/monoclonal in terms of variable heavy chain (VH) gene usage and expressed few mutations
Id+ mice have a polyclonal heavy (H) chain repertoire (21, 23, 28). Thus, even though the lymphomas all expressed the transgenic Id+ L chain, each lymphoma should express distinct H chains that could serve as a clonal marker. We therefore analyzed the VDJ sequence repertoires in two lymphoma mice and their recipients. In one mouse, the sequences obtained from the spleen, liver, and kidney were nearly monoclonal, and this signature was conserved over the course of four consecutive transfers (Fig. 6 and Fig. S7, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1). The second lymphoma mouse had a monoclonal VDJ admixed (1:4) with a polyclonal VH repertoire (see sequence information in Fig. 6 for the dominant clone). The polyclonality could clearly be seen in a Southern analysis detecting VDJ rearrangements (Fig. S11). Upon transfer, lymphoma sequences had a biclonal pattern, the original clone maintaining dominance (Figs. S8S10). Consistent with biclonality, two distinct clonal rearrangements were detected by Southern analysis. One of the bands appeared to correspond to one of the two lymphoma clones defined by sequencing (Figs. S9S11). Isotype-switch variants, as well as a low level of somatic mutations, were found in both of the original lymphoma mice (Fig. 6). Interestingly, with transfers and concomitant loss of Id-specific T cells, unmutated sequences with µ constant regions gained dominance (Fig. 6).
The Id+ lymphoma had major cytogenetic aberrations in genomic DNA detected by microarray comparative genomic hybridization (CGH)
We used high-resolution oligonucleotide-based microarray CGH to investigate whether lymphomas contained genomic aberrations. Although the technique does not give exact information on particular translocations that may exist in the mouse lymphomas, array CGH allows high-resolution analyses of DNA copy number aberrations genome-wide (29). Interestingly, all of the six independent lymphomas gained chromosomal material and half of them showed gain of whole chromosomes (Fig. S12 and S13, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1). Deletions were less extensive and more focal, but some recurrent alterations were found (Fig. S13). Aberrations in copy number included genes for regulation of transcription, signaling pathways, cell cycle and division, as well as apoptosis. Several aberrations were shared by three to five of the six lymphomas (Fig. S13), and some minor chromosomal segments were overrepresented in high copy number (>10; not depicted).
The Id+ lymphoma can be rejected by Id-specific T cells in vivo
Although Id+ lymphomas were induced by injection of Id-specific Th2 cells, they could nevertheless be susceptible to T cell immunosurveillance mediated by the inflammatory CD4+ Th1 cell subset previously suggested by us to mediate rejection of Id+ B lymphomas and myelomas (30, 31). To test this, Id+ lymphomas (1.25 x 106) were injected s.c. into Id-specific TCR transgenic SCID mice (that only have Id-specific CD4+ T cells and no CD8+ or B cells). SCID mice served as controls. Strikingly, no lymphomas were observed in the challenged TCR transgenic mice, whereas all SCID mice developed tumors (Fig. 7), clearly demonstrating the cytotoxicity of Id-specific CD4+ T cells against the Id+ lymphoma cells.
| DISCUSSION |
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The lymphomagenesis apparently started out as a polyclonal proliferation of Id+ B cell that later contracted into monoclonal/biclonal lymphomas that eventually gained T cell independence. During this process, lymphoma microheterogeneity, manifested as IgG isotype-switched variants and low levels of somatic mutation, was lost. It might be that the microheterogeneity seen in initial stages of lymphoma development could depend on Id-specific T cells. Moreover, in the absence of T cells, B lymphoma founder cells (IgM+ and unmutated VH) might have a growth advantage. Based on these findings, we would like to suggest a model where Id-specific Th2 cells induce extensive proliferation of Id+ B cells, rendering them vulnerable to the accumulation of oncogenic mutations.
Although most surface markers of the lymphoma indicated a marginal zone origin (CD9+CD1dHiCD38Hi IgMHiCD5CD23CD21HiBCL6), some markers did not fit with normal marginal zone B cells (35, 36) or marginal zone lymphomas (2527). More specifically, most lymphomas were IgDHi and about half expressed low levels of the transitional B cell marker AA4.1. This phenotype is most compatible with a putative intermediate between marginal zone precursor B cells and marginal zone B cells (see summary of surface markers in Fig. S14, available at http://www.jem.org/cgi/content/full/jem.20061220/DC1). In addition, we demonstrate that the lymphoma cells express the IL-3 receptor (as do marginal zone B cell precursors). Consistent with this, lymphoma cells proliferated in response to IL-3. Some plasmacytoid differentiation of the lymphomas was seen, especially with time, indicating a degree of terminal differentiation. In this regard, it has been demonstrated that marginal zone B cells are intrinsically capable of very rapidly maturing into plasma blasts (35, 36).
Why did the lymphomas have a late marginal zone precursor phenotype? First, it has been described that expression of the particular Id+
2315 L chain in transgenic mice selects against progression into the follicular B cell compartment, thus, the marginal zone B cell compartment is overrepresented in these mice (37, 38). As a possible explanation, the
2315 L chain might be poorly compatible with BCR specificities for endogenous antigen required for recruitment into the follicular compartment, as suggested in the BCR strength model (36). It has also been reported that marginal zone B cell precursors and B cells express high amounts of costimulatory molecules and are able to stimulate even naive T cells (36, 39). Collectively, (a) overrepresentation of Id+ B cells in the marginal zone lineage and (b) high stimulatory capacity for Id-specific T cells and responsiveness to IL-3 (produced by Th2 cells) could both contribute to the particular B lymphoma phenotype observed. It should be emphasized that the site of malignant transformation is not known. Although all mice had extensive peripheral involvement, lymphoma cells were also observed in the bone marrow of originator mice. Thus, we have not ruled out the possibility that the lymphomas in fact arose in the bone marrow and thereafter populated the spleen and LN with intact AA4.1 and IL-3 receptor expression as signs of recent bone marrow emigration. Because of this ambiguity, it is difficult to classify the lymphoma according to stages described for marginal zone lymphomas in mice (25, 26).
There is previous circumstantial evidence that supports a role for T cells in B cell lymphomagenesis. First, T cell infiltrates are a common feature of both Hodgkin's and non-Hodgkin's B cell lymphomas (2, 46). Second, lymphoma cells attract T cells (including Th2 cells) by secreting chemokines (40, 41). Third, human follicular B lymphoma cells often express CD40, ligation of which may facilitate their growth (42). Thus, in EBV-associated lymphomagenesis in SCID-Hu models, T cells as well as CD40 ligation were required (43, 44). Fourth, follicular lymphoma cells were helped in vitro by alloreactive T cells in a cell contactdependent manner (45). Fifth, in Bcl-2 trangenic mice, germinal center hyperplasia and eventual B lymphoma development was dependent on CD4+ T cells of unknown specificity (46). The present findings extend these previous observations by directly demonstrating that Id-specific Th2 cells can induce lymphomas by chronic cognate interaction with Id+ B cells. The results suggest that cognate Th2B cell collaboration could be lymphomagenic also when B cells chronically present other endogenous antigens like viral peptides to Th2 cells.
It is well known that autoimmune diseases like rheumatoid arthritis and systemic lupus erythematosus predispose for B lymphoma development (2, 3). It is therefore interesting to note that transfer of Id-specific Th2 cells into Id+ mice first induces a transient production of autoantibodies (23, 24) and, only later, B lymphomas. Thus, Id-driven TB collaboration might possibly represent a mechanism that explains the epidemiological link between autoimmunity and B lymphoma development.
It is surprising that Id-specific Th2 cells in the present experiments caused lymphomas because T cells are currently believed to eliminate rather than induce cancers. In fact, cancer cells have been suggested to be phenotypically sculpted by T cells in a process called immunoediting (47). The latter paradigm certainly applies to cytotoxic CD8+ and inflammatory CD4+ Th1 cells (47). As concerns Th2 cells, they have previously been reported to protect mice against ovalbumin-transfected lymphoma cells (48). However, those tumor- challenge experiments (48) were rather different from the present, where the continuous presence of Id-specific Th2 cells over many months induced Id+ B lymphomas, selected for ability to bidirectionally collaborate with the injected Th2 cells. We would therefore like to suggest that tumor-associated Th2 cells may initially nurture B lymphoma cells in a symbiotic relationship that we call T celldependent lymphomagenesis. Whether this process involves a selection of preexisting Th2 and B cells, or long-term mutual shaping events that facilitate potent interaction, remains to be determined.
It should be stressed that even with these Th2-induced lymphomas, immunosurveillance still operates because the lymphomas were promptly rejected when injected into Id-specific TCR-transgenic SCID mice, most likely caused by generation of cytotoxic Th1 cells (30). Thus, Id-specific CD4+ T cells with an identical TCR appear capable of either inducing or eradicating lymphoma cells, depending on T cell phenotype and the experimental situation.
Because few normal individuals develop lymphomas, severe constraints (ae) must operate on Id-driven TB collaboration and lymphoma development. (a) Id peptides must have the ability to bind MHC class II molecules of the individual. (b) T cells are tolerant to germline-encoded Id peptides and can only respond to rare Id peptides that express somatic mutations or N region diversity (1618). (c) Id+ B and Id-specific T cells are both infrequent, reducing the chance that matched cells encounter each other during lymphocyte recirculation (1719, 23). (d) Id-dependent TB collaboration could be controlled by peripheral tolerance mechanisms (4951). (e) The accumulation of secondary genetic changes required for B lymphoma development might be quite rare.
Some previous observations could, if reinterpreted, support a role for Id-driven TB collaboration in B cell tumorigenesis in patients (5255). Thus, Id-specific CD4+ T cells have previously been described in a B lymphoma patient (52), in B cell chronic lymphocytic leukemia patients (53), as well as in patients with monoclonal gammopathy of unknown significance (54) or multiple myeloma (55). In these cases, Id-specific T cells have been considered to fight the tumor. The present results suggest an alternative explanation, i.e., that Id-specific T cells could rather have promoted tumor development in these patients. Clearly, further studies on the dichotomous lymphomagenic versus lymphomatoxic potential of Id-specific CD4+ subsets (Th1 and Th2) are needed. This issue is particularly relevant to Id vaccination of patients, which conceivably could result in expansion of Id-specific T cells with tumor-enhancing instead of tumor-eradicating properties.
| MATERIALS AND METHODS |
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2315 Ig L chain (Id+ mice; reference 21) were on a BALB/c background. Offspring from BALB/c x hemizygous Id+ mice were used, with the transgene-negative littermates serving as negative controls. Id-specific TCR transgenic mice (17) were on a C.B-17 scid/scid background. BALB/c, BALB/c RAG2/, and C57BL/6 RAG2/ mice were obtained from Taconic M&B. Ovalbumin-specific DO.11.10 TCR transgenic mice were purchased from JaxMice. All experiments were approved by the Norwegian Animal Research Committee.
Induction and transfer of lymphomas.
Short-term cultured polarized Th2 cell lines were generated from Id-specific TCR transgenic SCID or ovalbumin-specific TCR transgenic mice as described previously (23), and 5 x 106 cells were injected i.v. every 10th day the indicated number of times into Id+ or Id littermates, starting at 6 wk of age. Mice were monitored for >250 d. The following signs of pathology were monitored: abdominal distension, lethargy, anemia, and weight loss. Splenic Id+ lymphomas were further transferred into recipients (RAG2/ BALB/c [H-2d] or RAG2/ C57BL/6 [H-2b]). In some experiments, BrdU was provided as an i.p. injection (1 mg) 2 d before analysis.
Antibodies and flow cytometry.
The following mAbs were affinity purified and biotinylated or FITC conjugated in our laboratory: transgenic TCR clonotypespecific GB113 (17), antiMHC class II (TIB-120 and M5/114.15.2; American Type Culture Collection), 2B6 (anti-C
2/3), and anti-
(187.1). The following antibodies (FITC, phycoerythrin, biotinylated, or allophycocyanin conjugated) were purchased from BD Biosciences: anti-CD1d (1B1), anti-CD4 (RM4-5), anti-CD5 (53-7.3), anti-CD8 (53-6.7), anti-CD9 (KMC8), anti-CD11b (M1/70), anti-CD19 (1D3), anti-CD21/CD35 (7G6), anti-CD23 (B3B4), anti-CD38 (90), anti-CD40 (3/23), anti-CD45R/B220 (RA3-6B2), anti-CD69 (H1.2F3), anti-CD80 (16-10A1), anti-CD86 (GL1) anti-CD138 (2812), anti-CD123 (5B11), anti-CD131 (JORO50), Ly-6G [Gr-1] (RB6-875), anti-TCRVß8 (F23.1), anti-IgMa (DS-1), anti-IgD (11-26c.2a), anti-immature B cells (AA4.1, anti-C1qRp/CD93), and anti-BrdU (Becton Dickinson). Streptavidin-Cy-chrome and streptavidin-peridinin chlorophyll-a protein (SAv-PerCP) were purchased from BD Biosciences. Quadruple stainings were performed with FITC-, PE-, PerCP-, and APC-conjugated mAbs and acquired on a FACS Calibur (Becton Dickinson), and files were analyzed with CellQuest Pro (BD Biosciences) and WinMDI 2.7.
B Lymphoma cell and T cell proliferation assays.
Both day 30cultured lymphoma cell lines and lymphoma cells taken directly ex vivo were tested. Proliferation of B lymphoma cells (5 x 104/well) in response to Id-specific T cells (5 x 104/well) was measured by culturing B cells with irradiated T cells (1,000 rad), with a 3H-TdR overnight pulse from day 2 to 3, as described previously (23). Conversely, lymphoma cells were irradiated and T cell proliferation was measured. Lymphoma cell proliferation was assayed in the presence of tittered concentrations of antiMHC class II (TIB-120), anti-CD80, and anti-CD86 mAbs. Recombinant cytokines were obtained from BD Biosciences.
Immunohistochemistry.
Organs were imbedded in OCT (Tissue-Tek). 5-µm frozen sections were mounted on L-polylysinecoated glass slides, air dried overnight, blocked with 30% heat-aggregated rat serum, stained with biotinylated or FITC-conjugated mAbs (see Antibodies and flow cytometry section) and streptavidin-Cy2 and 3 (GE Healthcare), and counterstained with DAPI (Invitrogen). 5-µm-thick formalin-fixed, paraffin-embedded tissue sections were rehydrated and stained. In brief, slides were soaked in xylene, passed through graded alcohols, and put in distilled water. Slides were then pretreated with 10 mM citrate, pH 6.0 (CD3, B220, and BCL-6), or 1.0 mM EDTA, pH 8.0 (CD138 and MUM1/IRF-4; Zymed Laboratories), in a steam pressure cooker (Decloaking Chamber; BioCare Medical) as per the manufacturer's instructions and followed by washing in distilled water. All further steps were performed at room temperature in a hydrated chamber. Slides were next pretreated with peroxidase block (DakoCytomation) for 5 min to quench endogenous peroxidase activity. Primary rabbit anti-CD3 antibody (DakoCytomation), rat-anti B220 (clone RA3-6B2, BD Biosciences), goat anti-MUM1/IRF-4 (M-17; Santa Cruz Biotechnology, Inc.), rabbit antiBCL-6 (N-3; Santa Cruz Biotechnology, Inc.), or rat anti-CD138 (clone 281-2; BD Biosciences) was applied in DakoCytomation diluent for 1 h. For B220 and CD138, rabbit antirat Ig antibody (DakoCytomation) was applied in DakoCytomation diluent for 1 h. Slides were washed in 50 mM Tris-Cl, pH 7.4, and detected with anti-rabbit Envision+ kit (CD3, B220, BCL-6, and CD138; DakoCytomation) or LSAB+ staining kit (MUM1/IRF-4; DakoCytomation) as per the manufacturer's instructions. After further washing, immunoperoxidase staining was developed using a DAB chromogen (DakoCytomation) and counterstained with hematoxylin.
Sequencing of lymphoma VH.
Variable heavy chains from mouse lymphoma tissue (spleen, liver, and kidney) were cloned by the use of degenerate FR1 region primers, designed to amplify most VH mouse sequences, together with C-region primers (56). The recombinant DNA was sequenced and analyzed for VDJ gene segment usage, somatic mutations, and isotype switch. In brief, total RNA was isolated from either mouse lymphoma tissue (spleen, liver, and kidney) frozen in OCT compound or from fresh lymphoma tissue submerged in RNAlater (Ambion) by use of TRIzol reagent (Invitrogen). Reverse transcriptase was performed using a NotI-d(T)18 primer (First-strand cDNA synthesis kit; GE Healthcare). cDNA was amplified by PCR using PfuTurbo DNA polymerase (Stratagene) and a mixture of 5' heavy chain FR1-region degeneracy primers together with a mixture of 3' heavy chain constant (C)region primers without cloning sites (reference 56; Sigma-Aldrich). The PCR products were run on a 1.5% agarose gel, and gel-purified products of predicted size (
400 bp; QIAquick gel extraction kit; QIAGEN) were ligated into pGEM-T Easy vector (Promega) and used to transform JM109 competent cells (Promega). Plasmid DNA was prepared from overnight cultures (Wizard plus SV minipreps DNA purification sSystem; Promega), and colonies found to contain an insert were sequenced using T7 and/or SP6 primer (GATC Biotech AG). At least three colonies were sequenced for each case. Sequence alignments were made using the current IMGT/V-QUEST (http://imgt.cines.fr) and NCBI/BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) tools to find the closest matching germline VDJ gene segments. The IMGT/JunctionAnalysis tool was used to identify the junctions between the rearranged VDJ gene segments, including N (nontemplate) and P (palindromic) nucleotides.
Statistical analysis.
In survival analyses, p-values were calculated with the Mantel-Haenszel Log rank test. The two-tailed Mann-Whitney test was used to calculate p-values when comparing numerical data.
VH sequences.
All nucleotide sequences are available from GenBank/EMBL/DDBJ under accession nos. DQ416684DQ416716.
Online supplemental material.
Figs. S1S14 provide an additional description of the lymphoma phenotype, cytogenetic abnormalities, lymphoma VDJ sequences, IL-3 receptor expression on marginal zone B cells, and marginal zone Id+ B cell responses to Id-specific T cells. Online supplemental material is available at http://www.jem.org/cgi/content/full/jem.20061220/DC1.
| Acknowledgments |
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The Norwegian Research Council, the Norwegian Cancer Society, Medinnova SF, and the Norwegian Foundation for Health and Rehabilitation supported this work.
The authors have no conflicting financial interests.
Submitted: 8 June 2006
Accepted: 13 April 2007
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